Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | DWX04_16920 | Not Available | Positive | 3959629 - 3960651 | 39716.6 |
| duf2813 domain-containing protein | DWX04_16925 | Not Available | Positive | 3961072 - 3962622 | 59515.5 |
| duf3872 domain-containing protein | DWX04_16940 | Not Available | Negative | 3963392 - 3963850 | 17573.6 |
| conjugal transfer protein trao | DWX04_16945 | Not Available | Negative | 3963871 - 3964458 | 21798.2 |
| conjugative transposon protein tran | DWX04_16950 | Not Available | Negative | 3964455 - 3965369 | 34885.4 |
| conjugative transposon protein tram | DWX04_16955 | Not Available | Negative | 3965420 - 3966727 | 47966.3 |
| hypothetical protein | DWX04_16960 | Not Available | Negative | 3966678 - 3966980 | 11238.8 |
| conjugative transposon protein trak | DWX04_16965 | Not Available | Negative | 3966977 - 3967600 | 23932.5 |
| conjugative transposon protein traj | DWX04_16970 | Not Available | Negative | 3967723 - 3968736 | 37409.8 |
| duf4141 domain-containing protein | DWX04_16975 | Not Available | Negative | 3968739 - 3969368 | 23991.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

