Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4091 domain-containing protein | DWX04_16705 | Not Available | Positive | 3921129 - 3922673 | 60436.9 |
| integrase | DWX04_16710 | Not Available | Positive | 3923251 - 3924600 | 52505.4 |
| hypothetical protein | DWX04_16715 | Not Available | Positive | 3924719 - 3926332 | 62353.0 |
| duf3853 family protein | DWX04_16720 | Not Available | Positive | 3926541 - 3926891 | 13097.0 |
| duf3853 family protein | DWX04_16725 | Not Available | Positive | 3927295 - 3927585 | 10770.0 |
| hypothetical protein | DWX04_16730 | Not Available | Positive | 3927592 - 3928692 | 41162.1 |
| hypothetical protein | DWX04_16735 | Not Available | Positive | 3928923 - 3929338 | 16204.7 |
| glycerate kinase | DWX04_16745 | Not Available | Positive | 3930122 - 3931261 | 39726.5 |
| bifunctional fucokinase/l-fucose-1-p-guanylyltransferase | DWX04_16750 | Not Available | Negative | 3931248 - 3934088 | 105163.0 |
| nitroreductase family protein | DWX04_16755 | Not Available | Negative | 3934162 - 3934767 | 23230.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

