Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 9-o-acetylesterase | DWX04_16655 | Not Available | Positive | 3902542 - 3904494 | 72974.1 |
| arac family transcriptional regulator | DWX04_16660 | Not Available | Negative | 3904507 - 3905403 | 34794.4 |
| alpha-galactosidase | DWX04_16665 | Not Available | Positive | 3905591 - 3907747 | 82536.3 |
| rna polymerase sigma-70 factor | DWX04_16670 | Not Available | Positive | 3908631 - 3909194 | 22325.0 |
| fecr family protein | DWX04_16675 | Not Available | Positive | 3909301 - 3910230 | 36308.6 |
| susc/raga family tonb-linked outer membrane protein | DWX04_16680 | Not Available | Positive | 3910369 - 3913809 | 129840.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_16685 | Not Available | Positive | 3913821 - 3915611 | 69614.6 |
| glycoside hydrolase | DWX04_16690 | Not Available | Positive | 3915689 - 3918043 | 89634.7 |
| glycoside hydrolase family 20 | DWX04_16695 | Not Available | Positive | 3918096 - 3919676 | 61280.4 |
| endonuclease | DWX04_16700 | Not Available | Positive | 3919708 - 3921126 | 53989.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

