Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DWX04_16385 | Not Available | Negative | 3826877 - 3828163 | 49706.0 |
| dna-binding response regulator | DWX04_16390 | Not Available | Negative | 3828164 - 3828841 | 25927.3 |
| hypothetical protein | DWX04_16395 | Not Available | Negative | 3829062 - 3829799 | 27787.7 |
| arylsulfatase | DWX04_16400 | Not Available | Positive | 3830278 - 3831825 | 56930.6 |
| crp/fnr family transcriptional regulator | DWX04_16405 | Not Available | Negative | 3832110 - 3832700 | 21991.1 |
| hydroxylamine reductase | DWX04_16410 | Not Available | Positive | 3832815 - 3834473 | 61118.4 |
| iron-sulfur cluster repair di-iron protein | DWX04_16415 | Not Available | Positive | 3834485 - 3835216 | 28008.3 |
| glycoside hydrolase family 95 protein | DWX04_16420 | Not Available | Negative | 3835296 - 3837755 | 91860.4 |
| hypothetical protein | DWX04_16430 | Not Available | Positive | 3838317 - 3838775 | 17855.5 |
| energy transducer tonb | DWX04_16435 | Not Available | Positive | 3838805 - 3840190 | 52068.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

