Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWX04_01230 | Not Available | Positive | 282658 - 284133 | 54873.2 |
| noncanonical pyrimidine nucleotidase, yjjg family | DWX04_01235 | Not Available | Negative | 284284 - 284973 | 26926.8 |
| hypothetical protein | DWX04_01240 | Not Available | Negative | 285049 - 285897 | 31533.4 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DWX04_01245 | Not Available | Negative | 285926 - 286600 | 24887.2 |
| thymidine kinase | DWX04_01250 | Not Available | Positive | 286805 - 287404 | 22372.9 |
| ai-2e family transporter | DWX04_01255 | Not Available | Positive | 287415 - 288551 | 42701.1 |
| Trna-lys | Not Available | Not Available | Positive | 288643 - 288718 | Not Available |
| hypothetical protein | DWX04_01265 | Not Available | Negative | 289063 - 289314 | 9657.67 |
| hypothetical protein | DWX04_01270 | Not Available | Negative | 289357 - 289452 | 3305.9 |
| cardiolipin synthase | DWX04_01275 | Not Available | Positive | 289821 - 291116 | 49710.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

