Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_15875 | Not Available | Positive | 3702787 - 3705093 | 86896.1 |
| peptidase c39 | DWX04_15880 | Not Available | Negative | 3705112 - 3705699 | 23231.6 |
| hypothetical protein | DWX04_15885 | Not Available | Negative | 3705820 - 3706746 | 35818.5 |
| duf3244 domain-containing protein | DWX04_15890 | Not Available | Negative | 3706890 - 3707294 | 14882.9 |
| hypothetical protein | DWX04_15895 | Not Available | Negative | 3707453 - 3709309 | 72886.5 |
| cytidylate kinase-like family protein | DWX04_15900 | Not Available | Negative | 3709539 - 3710168 | 23564.2 |
| mate family efflux transporter | DWX04_15905 | Not Available | Negative | 3710222 - 3711592 | 49490.1 |
| serine protease | DWX04_15910 | Not Available | Positive | 3711714 - 3713087 | 49946.9 |
| exodeoxyribonuclease vii large subunit | DWX04_15915 | Not Available | Positive | 3713087 - 3714394 | 49535.8 |
| exodeoxyribonuclease vii small subunit | DWX04_15920 | Not Available | Positive | 3714403 - 3714606 | 7823.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

