Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdp-mannose 4,6-dehydratase | DWX04_15765 | Not Available | Positive | 3678523 - 3679605 | 41246.6 |
| gdp-l-fucose synthase | DWX04_15770 | Not Available | Positive | 3679605 - 3680681 | 40498.7 |
| methylmalonyl-coa mutase | DWX04_15775 | Not Available | Negative | 3680896 - 3683046 | 79111.7 |
| methylmalonyl-coa mutase small subunit | DWX04_15780 | Not Available | Negative | 3683056 - 3684966 | 70522.5 |
| putative transporter | DWX04_15785 | Not Available | Positive | 3685252 - 3686922 | 60144.9 |
| abc transporter atp-binding protein | DWX04_15790 | Not Available | Positive | 3687038 - 3688672 | 61961.7 |
| dtdp-glucose 4,6-dehydratase | DWX04_15805 | Not Available | Negative | 3689410 - 3690549 | 43738.0 |
| metallophosphoesterase | DWX04_15810 | Not Available | Negative | 3690598 - 3691095 | 18707.5 |
| rna degradosome polyphosphate kinase | DWX04_15815 | Not Available | Positive | 3691153 - 3693207 | 80560.6 |
| hypothetical protein | DWX04_15820 | Not Available | Negative | 3693233 - 3693454 | 8538.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

