Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | DWX04_15715 | Not Available | Negative | 3665690 - 3666055 | 14101.4 |
| nudix hydrolase | DWX04_15720 | Not Available | Positive | 3666411 - 3667145 | 28586.5 |
| carbohydrate kinase | DWX04_15725 | Not Available | Positive | 3667317 - 3668810 | 53461.6 |
| xylose isomerase | DWX04_15730 | Not Available | Positive | 3668902 - 3670218 | 49038.9 |
| capsule biosynthesis protein | DWX04_15735 | Not Available | Positive | 3670458 - 3672950 | 92267.4 |
| chain-length determining protein | DWX04_15740 | Not Available | Positive | 3672958 - 3674097 | 41526.8 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWX04_15745 | Not Available | Negative | 3674274 - 3674843 | 21738.7 |
| glucose-1-phosphate thymidylyltransferase | DWX04_15750 | Not Available | Negative | 3674843 - 3675730 | 32765.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DWX04_15755 | Not Available | Negative | 3675766 - 3677169 | 54181.0 |
| mannose-1-phosphate guanylyltransferase | DWX04_15760 | Not Available | Positive | 3677283 - 3678347 | 40506.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

