Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate epimerase | DWX04_15465 | Not Available | Positive | 3605236 - 3606078 | 30266.6 |
| ll-diaminopimelate aminotransferase | DWX04_15470 | Not Available | Positive | 3606125 - 3607354 | 45950.0 |
| hypothetical protein | DWX04_15475 | Not Available | Positive | 3607473 - 3608198 | 25631.8 |
| p-ii family nitrogen regulator | DWX04_15480 | Not Available | Positive | 3608316 - 3608672 | 13455.3 |
| ammonium transporter | DWX04_15485 | Not Available | Positive | 3608749 - 3610107 | 47692.6 |
| glutamine synthetase type iii | DWX04_15490 | Not Available | Positive | 3610170 - 3612359 | 82007.6 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DWX04_15495 | Not Available | Positive | 3612673 - 3614517 | 67786.6 |
| amidophosphoribosyltransferase | DWX04_15500 | Not Available | Positive | 3614676 - 3616559 | 71327.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DWX04_15505 | Not Available | Positive | 3616585 - 3617661 | 39980.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DWX04_15510 | Not Available | Positive | 3617685 - 3620909 | 119693.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

