Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acrb/acrd/acrf family protein | DWX04_01125 | Not Available | Positive | 241506 - 244541 | 112056.0 |
| tolc family protein | DWX04_01130 | Not Available | Positive | 244538 - 245857 | 50562.7 |
| amino acid permease | DWX04_01135 | Not Available | Positive | 245946 - 247604 | 59758.4 |
| alpha-n-acetylglucosaminidase | DWX04_01140 | Not Available | Negative | 247777 - 249933 | 82818.5 |
| fumarate hydratase | DWX04_01145 | Not Available | Negative | 250036 - 251679 | 60487.7 |
| coce/nond family hydrolase | DWX04_01150 | Not Available | Positive | 251818 - 253725 | 73939.0 |
| duf4954 family protein | DWX04_01155 | Not Available | Negative | 253873 - 255858 | 74509.4 |
| gtpase hflx | DWX04_01160 | Not Available | Negative | 255872 - 257125 | 47629.5 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_01165 | Not Available | Negative | 257217 - 258803 | 58738.4 |
| tonb-dependent receptor | DWX04_01170 | Not Available | Negative | 258827 - 261826 | 111236.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

