Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DWX04_14435 | Not Available | Positive | 3373361 - 3374875 | 55852.0 |
| duf3109 family protein | DWX04_14440 | Not Available | Positive | 3374978 - 3375559 | 22097.6 |
| hypothetical protein | DWX04_14445 | Not Available | Positive | 3375626 - 3376813 | 44355.6 |
| peptidase | DWX04_14450 | Not Available | Positive | 3377055 - 3378914 | 67221.0 |
| hypothetical protein | DWX04_14455 | Not Available | Positive | 3378933 - 3379913 | 34842.3 |
| alpha-amylase | DWX04_14460 | Not Available | Negative | 3380084 - 3382663 | 97719.8 |
| duf5115 domain-containing protein | DWX04_14465 | Not Available | Negative | 3382753 - 3384147 | 50653.2 |
| susf/suse family outer membrane protein | DWX04_14470 | Not Available | Negative | 3384192 - 3385328 | 41569.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_14475 | Not Available | Negative | 3385357 - 3387051 | 63567.8 |
| tonb-dependent receptor | DWX04_14480 | Not Available | Negative | 3387064 - 3390093 | 111498.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

