Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ump kinase | DWX04_01075 | Not Available | Positive | 227263 - 227973 | 25575.2 |
| glycoside hydrolase family 88 protein | DWX04_01080 | Not Available | Positive | 228231 - 229469 | 47185.2 |
| hypothetical protein | DWX04_01085 | Not Available | Positive | 229524 - 231632 | 79907.1 |
| duf4450 domain-containing protein | DWX04_01090 | Not Available | Positive | 231657 - 234914 | 121438.0 |
| histidine phosphatase family protein | DWX04_01095 | Not Available | Negative | 234937 - 235455 | 19477.5 |
| aaa family atpase | DWX04_01100 | Not Available | Negative | 235858 - 237438 | 61243.0 |
| ribosome-recycling factor | DWX04_01105 | Not Available | Positive | 237677 - 238237 | 20738.2 |
| ribosome small subunit-dependent gtpase a | DWX04_01110 | Not Available | Positive | 238358 - 239290 | 35098.8 |
| m20/m25/m40 family metallo-hydrolase | DWX04_01115 | Not Available | Positive | 239304 - 240323 | 38293.7 |
| efflux rnd transporter periplasmic adaptor subunit | DWX04_01120 | Not Available | Positive | 240410 - 241486 | 39658.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

