Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine exporter lyso family protein | DWX04_14385 | Not Available | Negative | 3360349 - 3360951 | 21649.9 |
| duf340 domain-containing protein | DWX04_14390 | Not Available | Negative | 3360948 - 3361229 | 10217.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_14395 | Not Available | Negative | 3361344 - 3362861 | 57946.4 |
| tonb-dependent receptor | DWX04_14400 | Not Available | Negative | 3362882 - 3366010 | 116436.0 |
| tetratricopeptide repeat protein | DWX04_14405 | Not Available | Negative | 3366234 - 3367859 | 63093.9 |
| ribonuclease hii | DWX04_14410 | Not Available | Positive | 3367961 - 3368566 | 22930.4 |
| l-fucose:h+ symporter permease | DWX04_14415 | Not Available | Negative | 3368709 - 3370022 | 48425.4 |
| l-fucose isomerase | DWX04_14420 | Not Available | Negative | 3370135 - 3371910 | 65624.0 |
| gntr family transcriptional regulator | DWX04_14425 | Not Available | Negative | 3371932 - 3372912 | 38068.7 |
| hypothetical protein | DWX04_14430 | Not Available | Negative | 3373088 - 3373294 | 7450.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

