Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DWX04_14070 | Not Available | Negative | 3292444 - 3293622 | 46118.2 |
| hypothetical protein | DWX04_14075 | Not Available | Positive | 3293725 - 3294936 | 45667.2 |
| tolc family protein | DWX04_14080 | Not Available | Negative | 3294975 - 3296348 | 51824.2 |
| multidrug efflux rnd transporter permease subunit | DWX04_14085 | Not Available | Negative | 3296370 - 3299471 | 113097.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWX04_14090 | Not Available | Negative | 3299538 - 3300737 | 44405.6 |
| trkh family potassium uptake protein | DWX04_14095 | Not Available | Positive | 3301231 - 3302739 | 56375.6 |
| mate family efflux transporter | DWX04_14100 | Not Available | Positive | 3302865 - 3304226 | 49514.6 |
| rna pseudouridine synthase | DWX04_14105 | Not Available | Negative | 3304292 - 3305914 | 62159.9 |
| hypothetical protein | DWX04_14110 | Not Available | Negative | 3305962 - 3306276 | 12159.8 |
| hypothetical protein | DWX04_14115 | Not Available | Positive | 3306463 - 3306669 | 7809.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

