Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| wg repeat-containing protein | DWX04_13960 | Not Available | Positive | 3267677 - 3269524 | 68550.7 |
| hypothetical protein | DWX04_13965 | Not Available | Positive | 3269543 - 3270754 | 45890.6 |
| hypothetical protein | DWX04_13970 | Not Available | Positive | 3271182 - 3271424 | 8901.08 |
| port family protein | DWX04_13975 | Not Available | Positive | 3271440 - 3272216 | 29135.6 |
| sigma-54-dependent fis family transcriptional regulator | DWX04_13980 | Not Available | Negative | 3272730 - 3274052 | 49803.3 |
| response regulator | DWX04_13985 | Not Available | Negative | 3274045 - 3276354 | 87568.9 |
| dna-binding response regulator | DWX04_13990 | Not Available | Positive | 3276663 - 3277427 | 28686.6 |
| transferase | DWX04_13995 | Not Available | Positive | 3277525 - 3277899 | 12975.6 |
| duf1349 domain-containing protein | DWX04_14000 | Not Available | Positive | 3278037 - 3278783 | 27469.4 |
| duf1349 domain-containing protein | DWX04_14005 | Not Available | Positive | 3278861 - 3279505 | 24728.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

