Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pap2 family protein | DWX04_13760 | Not Available | Negative | 3221447 - 3222064 | 23044.7 |
| hybrid sensor histidine kinase/response regulator | DWX04_13765 | Not Available | Negative | 3222171 - 3226160 | 152265.0 |
| hypothetical protein | DWX04_13770 | Not Available | Positive | 3226457 - 3227212 | 28188.2 |
| fluoride efflux transporter crcb | DWX04_13775 | Not Available | Negative | 3227287 - 3227652 | 13272.6 |
| amidophosphoribosyltransferase | DWX04_13780 | Not Available | Positive | 3227751 - 3229157 | 51992.8 |
| peptidase t | DWX04_13785 | Not Available | Positive | 3229265 - 3230485 | 45287.2 |
| glycine cleavage system aminomethyltransferase gcvt | DWX04_13790 | Not Available | Positive | 3230521 - 3231606 | 39665.6 |
| sodium:proton antiporter | DWX04_13795 | Not Available | Positive | 3231812 - 3234079 | 84385.5 |
| hit family protein | DWX04_13800 | Not Available | Positive | 3234104 - 3234529 | 16329.5 |
| rna-binding s4 domain-containing protein | DWX04_13805 | Not Available | Negative | 3234620 - 3235048 | 16437.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

