Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_13705 | Not Available | Positive | 3208636 - 3209763 | 40715.2 |
| conjugative transposon protein trak | DWX04_13710 | Not Available | Positive | 3209783 - 3210379 | 22911.7 |
| hypothetical protein | DWX04_13715 | Not Available | Positive | 3210392 - 3210880 | 18324.5 |
| conjugative transposon protein tram | DWX04_13720 | Not Available | Positive | 3210877 - 3212088 | 45393.9 |
| conjugative transposon protein tran | DWX04_13725 | Not Available | Positive | 3212151 - 3213038 | 34317.1 |
| hypothetical protein | DWX04_13730 | Not Available | Positive | 3213042 - 3213515 | 17837.7 |
| type iv secretory system conjugative dna transfer family protein | DWX04_13735 | Not Available | Positive | 3213540 - 3215849 | 87535.1 |
| conjugal transfer protein trax | DWX04_13740 | Not Available | Positive | 3215861 - 3216544 | 26307.1 |
| type ii pantothenate kinase | DWX04_13750 | Not Available | Negative | 3218591 - 3219415 | 29299.7 |
| 9-o-acetylesterase | DWX04_13755 | Not Available | Negative | 3219493 - 3221409 | 72594.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

