Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | DWX04_13605 | Not Available | Negative | 3186106 - 3187032 | 35616.1 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DWX04_13610 | Not Available | Negative | 3187077 - 3188498 | 54018.2 |
| pyruvate, phosphate dikinase | DWX04_13615 | Not Available | Positive | 3188697 - 3191420 | 99937.6 |
| transposase | DWX04_13620 | Not Available | Positive | 3191622 - 3193118 | 57980.9 |
| hypothetical protein | DWX04_13625 | Not Available | Negative | 3193210 - 3193422 | 8345.17 |
| hypothetical protein | DWX04_13630 | Not Available | Positive | 3194029 - 3194301 | 10031.3 |
| hypothetical protein | DWX04_13635 | Not Available | Positive | 3194298 - 3194684 | 14742.8 |
| mobilization protein | DWX04_13640 | Not Available | Positive | 3194803 - 3196371 | 60740.5 |
| rna-dependent dna polymerase | DWX04_13645 | Not Available | Negative | 3196533 - 3198788 | 89796.0 |
| hypothetical protein | DWX04_13650 | Not Available | Negative | 3198785 - 3200188 | 54961.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

