Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1460 domain-containing protein | DWX04_13555 | Not Available | Negative | 3171918 - 3172802 | 33269.5 |
| biotin/lipoyl-binding protein | DWX04_13560 | Not Available | Negative | 3172928 - 3174703 | 66786.9 |
| rna polymerase sigma factor | DWX04_13565 | Not Available | Negative | 3174893 - 3175396 | 19699.7 |
| trimeric intracellular cation channel family protein | DWX04_13570 | Not Available | Negative | 3175555 - 3176169 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DWX04_13575 | Not Available | Positive | 3176253 - 3177341 | 40245.9 |
| duf3078 domain-containing protein | DWX04_13580 | Not Available | Negative | 3177442 - 3178836 | 53456.6 |
| ctp synthase | DWX04_13585 | Not Available | Positive | 3179046 - 3180644 | 60081.3 |
| membrane protein insertase yidc | DWX04_13590 | Not Available | Positive | 3180684 - 3182549 | 70945.9 |
| hypothetical protein | DWX04_13595 | Not Available | Negative | 3182479 - 3182712 | 8734.26 |
| s9 family peptidase | DWX04_13600 | Not Available | Positive | 3182777 - 3184897 | 79823.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

