Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_13505 | Not Available | Negative | 3160997 - 3161824 | 31907.4 |
| penicillin-binding protein | DWX04_13510 | Not Available | Negative | 3162031 - 3164358 | 88345.2 |
| aspartate carbamoyltransferase | DWX04_13515 | Not Available | Positive | 3164519 - 3165460 | 36259.7 |
| aspartate carbamoyltransferase regulatory subunit | DWX04_13520 | Not Available | Positive | 3165469 - 3165936 | 17408.3 |
| flavin reductase family protein | DWX04_13525 | Not Available | Positive | 3165942 - 3166529 | 21914.5 |
| port family protein | DWX04_13530 | Not Available | Positive | 3166539 - 3167258 | 27382.5 |
| serine hydroxymethyltransferase | DWX04_13535 | Not Available | Positive | 3167505 - 3168785 | 46829.6 |
| mate family efflux transporter | DWX04_13540 | Not Available | Positive | 3168984 - 3170327 | 49320.3 |
| ompa family protein | DWX04_13545 | Not Available | Positive | 3170376 - 3171095 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DWX04_13550 | Not Available | Positive | 3171224 - 3171946 | 27920.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

