Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin | DWX04_13330 | Not Available | Positive | 3129848 - 3132157 | 87674.7 |
| Trna-arg | Not Available | Not Available | Positive | 3132247 - 3132323 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3132341 - 3132417 | Not Available |
| 4-hydroxy-tetrahydrodipicolinate synthase | DWX04_13350 | Not Available | Negative | 3133016 - 3133909 | 32789.2 |
| nad-dependent dna ligase liga | DWX04_13355 | Not Available | Negative | 3134011 - 3136008 | 75156.7 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DWX04_13360 | Not Available | Positive | 3136107 - 3136781 | 25423.7 |
| dihydroorotate dehydrogenase | DWX04_13365 | Not Available | Negative | 3137147 - 3138058 | 32333.4 |
| dihydroorotate dehydrogenase electron transfer subunit | DWX04_13370 | Not Available | Negative | 3138046 - 3138825 | 28483.2 |
| xre family transcriptional regulator | DWX04_13375 | Not Available | Negative | 3138919 - 3139371 | 17319.5 |
| dna polymerase iii subunit delta | DWX04_13385 | Not Available | Negative | 3140492 - 3141508 | 38871.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

