Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_13225 | Not Available | Positive | 3100510 - 3103311 | 103262.0 |
| hypothetical protein | DWX04_13230 | Not Available | Positive | 3103494 - 3104402 | 35012.5 |
| radical sam protein | DWX04_13235 | Not Available | Positive | 3104409 - 3105683 | 48791.5 |
| rpn family recombination-promoting nuclease/putative transposase | DWX04_13240 | Not Available | Positive | 3105904 - 3106782 | 34582.2 |
| m20/m25/m40 family metallo-hydrolase | DWX04_13245 | Not Available | Negative | 3106788 - 3107852 | 39122.8 |
| long-chain fatty acid--coa ligase | DWX04_13250 | Not Available | Positive | 3108066 - 3109871 | 68524.4 |
| peptide chain release factor 2 | DWX04_13255 | Not Available | Positive | 3109929 - 3111044 | 42519.2 |
| cyth domain-containing protein | DWX04_13260 | Not Available | Positive | 3111339 - 3111809 | 18287.6 |
| tonb-dependent receptor | DWX04_13265 | Not Available | Positive | 3111899 - 3114373 | 91585.5 |
| rna polymerase sigma factor | DWX04_13270 | Not Available | Positive | 3114542 - 3115045 | 19779.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

