Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prephenate dehydratase | DWX04_12545 | Not Available | Negative | 2958336 - 2959178 | 31728.1 |
| transcriptional regulator | DWX04_12550 | Not Available | Negative | 2959436 - 2959792 | 13384.4 |
| protease | DWX04_12555 | Not Available | Positive | 2959982 - 2960512 | 18954.9 |
| pyridoxal phosphate-dependent aminotransferase | DWX04_12560 | Not Available | Positive | 2960581 - 2961756 | 44771.1 |
| ai-2e family transporter | DWX04_12565 | Not Available | Negative | 2961757 - 2962758 | 36988.0 |
| tetratricopeptide repeat protein | DWX04_12570 | Not Available | Negative | 2962818 - 2963768 | 35751.7 |
| o-glcnacase | DWX04_12575 | Not Available | Negative | 2963783 - 2965996 | 84872.2 |
| recq family atp-dependent dna helicase | DWX04_12580 | Not Available | Negative | 2966043 - 2967938 | 72952.9 |
| single-stranded-dna-specific exonuclease recj | DWX04_12585 | Not Available | Negative | 2968056 - 2969828 | 66543.5 |
| aminopeptidase | DWX04_12590 | Not Available | Negative | 2969943 - 2971154 | 45970.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

