Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| u32 family peptidase | DWX04_12440 | Not Available | Positive | 2929309 - 2931138 | 69914.0 |
| zinc ribbon domain-containing protein | DWX04_12445 | Not Available | Positive | 2931125 - 2932087 | 36788.1 |
| tonb-dependent receptor | DWX04_12450 | Not Available | Negative | 2932327 - 2934750 | 92003.9 |
| luxr family transcriptional regulator | DWX04_12455 | Not Available | Negative | 2934920 - 2935540 | 23357.5 |
| fad-binding protein | DWX04_12460 | Not Available | Negative | 2935668 - 2937311 | 60674.7 |
| duf1847 domain-containing protein | DWX04_12465 | Not Available | Negative | 2937317 - 2937967 | 24414.5 |
| dna repair protein rada | DWX04_12470 | Not Available | Negative | 2938007 - 2939374 | 49904.5 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DWX04_12475 | Not Available | Positive | 2939902 - 2942334 | 88625.7 |
| cofactor-independent phosphoglycerate mutase | DWX04_12480 | Not Available | Positive | 2942339 - 2943550 | 44610.5 |
| threonine synthase | DWX04_12485 | Not Available | Positive | 2943641 - 2944942 | 47723.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

