Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | DWX04_12270 | Not Available | Negative | 2887371 - 2888531 | 42749.4 |
| aspartate kinase | DWX04_12275 | Not Available | Negative | 2888639 - 2889958 | 49296.1 |
| atp-binding cassette domain-containing protein | DWX04_12280 | Not Available | Negative | 2890066 - 2890821 | 28375.1 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DWX04_12285 | Not Available | Negative | 2890826 - 2891437 | 23137.6 |
| imidazole glycerol phosphate synthase subunit hisf | DWX04_12290 | Not Available | Negative | 2891602 - 2892357 | 27291.5 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DWX04_12295 | Not Available | Negative | 2892367 - 2893086 | 26636.3 |
| imidazole glycerol phosphate synthase subunit hish | DWX04_12300 | Not Available | Negative | 2893128 - 2893718 | 22270.8 |
| formyltetrahydrofolate deformylase | DWX04_12305 | Not Available | Negative | 2893718 - 2894575 | 33273.6 |
| Trna-asp | Not Available | Not Available | Positive | 2894839 - 2894915 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 2894944 - 2895020 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

