Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | DWX04_12220 | Not Available | Negative | 2878184 - 2878852 | 25398.4 |
| duf4494 domain-containing protein | DWX04_12225 | Not Available | Negative | 2878886 - 2879368 | 18209.6 |
| fucose isomerase | DWX04_12230 | Not Available | Negative | 2879464 - 2880699 | 46204.4 |
| pyridoxal phosphate-dependent aminotransferase | DWX04_12235 | Not Available | Positive | 2880865 - 2882067 | 44969.1 |
| abc transporter permease | DWX04_12240 | Not Available | Positive | 2882069 - 2883313 | 46918.6 |
| lysine exporter lyso family protein | DWX04_12245 | Not Available | Negative | 2883660 - 2884280 | 22075.5 |
| duf340 domain-containing protein | DWX04_12250 | Not Available | Negative | 2884270 - 2884557 | 10298.2 |
| antibiotic biosynthesis monooxygenase | DWX04_12255 | Not Available | Negative | 2885114 - 2885389 | 10430.6 |
| glycosyltransferase | DWX04_12260 | Not Available | Negative | 2885438 - 2886595 | 44764.2 |
| hypothetical protein | DWX04_12265 | Not Available | Positive | 2886800 - 2887306 | 19783.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

