Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-2-hydroxyacid dehydrogenase | DWX04_12020 | Not Available | Positive | 2829802 - 2830758 | 34358.8 |
| c_gcaxxg_c_c family protein | DWX04_12025 | Not Available | Positive | 2830802 - 2831305 | 18560.2 |
| hypothetical protein | DWX04_12030 | Not Available | Positive | 2831462 - 2831665 | 7433.15 |
| type ii toxin-antitoxin system hica family toxin | DWX04_12035 | Not Available | Positive | 2831820 - 2832008 | 6962.6 |
| antitoxin hicb | DWX04_12040 | Not Available | Positive | 2832048 - 2832440 | 14724.7 |
| elongation factor 4 | DWX04_12045 | Not Available | Positive | 2832524 - 2834305 | 66375.4 |
| na+/h+ antiporter nhaa | DWX04_12050 | Not Available | Positive | 2834438 - 2835778 | 48637.6 |
| sensor histidine kinase | DWX04_12055 | Not Available | Negative | 2835781 - 2838054 | 87799.6 |
| amino acid permease | DWX04_12060 | Not Available | Negative | 2838271 - 2839848 | 56520.8 |
| two pore domain potassium channel family protein | DWX04_12065 | Not Available | Positive | 2840015 - 2840749 | 28208.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

