Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,3/4-fucosidase | DWX04_11715 | Not Available | Negative | 2758994 - 2760853 | 69765.9 |
| duf4981 domain-containing protein | DWX04_11720 | Not Available | Negative | 2760871 - 2763930 | 116622.0 |
| beta-hexosaminidase | DWX04_11725 | Not Available | Negative | 2763939 - 2766254 | 87314.9 |
| duf4976 domain-containing protein | DWX04_11730 | Not Available | Negative | 2766272 - 2767855 | 61699.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_11740 | Not Available | Negative | 2768062 - 2769897 | 68507.3 |
| tonb-dependent receptor | DWX04_11745 | Not Available | Negative | 2769927 - 2773148 | 116953.0 |
| xylanase | DWX04_11750 | Not Available | Positive | 2773430 - 2774815 | 51035.4 |
| hybrid sensor histidine kinase/response regulator | DWX04_11755 | Not Available | Positive | 2774951 - 2778883 | 149289.0 |
| rna-binding protein | DWX04_11760 | Not Available | Positive | 2779149 - 2779394 | 9144.0 |
| threonine/serine exporter family protein | DWX04_11765 | Not Available | Negative | 2779494 - 2780840 | 50176.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

