Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase | DWX04_11565 | Not Available | Negative | 2709407 - 2711863 | 93834.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_11570 | Not Available | Negative | 2712148 - 2713839 | 62941.1 |
| tonb-dependent receptor | DWX04_11575 | Not Available | Negative | 2713853 - 2716954 | 114541.0 |
| response regulator | DWX04_11580 | Not Available | Positive | 2717266 - 2721288 | 152167.0 |
| duf3810 domain-containing protein | DWX04_11585 | Not Available | Negative | 2721506 - 2722546 | 40924.9 |
| duf2264 domain-containing protein | DWX04_11590 | Not Available | Negative | 2722688 - 2725003 | 88864.1 |
| neuraminidase | DWX04_11595 | Not Available | Negative | 2725095 - 2726369 | 49219.2 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DWX04_11600 | Not Available | Negative | 2726792 - 2728090 | 48324.2 |
| dihydropteroate synthase | DWX04_11605 | Not Available | Positive | 2728209 - 2729066 | 32012.9 |
| tigr00159 family protein | DWX04_11610 | Not Available | Positive | 2729098 - 2729862 | 28478.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

