Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glycosidase | DWX04_11515 | Not Available | Negative | 2690548 - 2692056 | 57900.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_11520 | Not Available | Negative | 2692162 - 2693904 | 67438.7 |
| susc/raga family tonb-linked outer membrane protein | DWX04_11525 | Not Available | Negative | 2693917 - 2697195 | 122411.0 |
| duf4974 domain-containing protein | DWX04_11530 | Not Available | Negative | 2697346 - 2698290 | 36220.8 |
| rna polymerase sigma-70 factor | DWX04_11535 | Not Available | Negative | 2698365 - 2698925 | 22053.3 |
| helicase | DWX04_11540 | Not Available | Positive | 2699129 - 2701642 | 97377.7 |
| tonb-dependent receptor | DWX04_11545 | Not Available | Positive | 2702157 - 2705228 | 113241.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_11550 | Not Available | Positive | 2705241 - 2706794 | 58382.6 |
| glycoside hydrolase | DWX04_11555 | Not Available | Negative | 2706914 - 2707915 | 37800.4 |
| beta-glucanase | DWX04_11560 | Not Available | Negative | 2708240 - 2709382 | 42599.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

