Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03905 family tscpd domain-containing protein | DWX04_11360 | Not Available | Positive | 2654904 - 2655149 | 9080.04 |
| hypothetical protein | DWX04_11365 | Not Available | Positive | 2655875 - 2656123 | 9849.92 |
| hypothetical protein | DWX04_11370 | Not Available | Positive | 2656153 - 2656740 | 22205.0 |
| transcriptional regulator | DWX04_11375 | Not Available | Positive | 2656751 - 2657041 | 10672.2 |
| malate dehydrogenase | DWX04_11380 | Not Available | Positive | 2657285 - 2658286 | 36087.5 |
| dna primase | DWX04_11385 | Not Available | Positive | 2658364 - 2660439 | 78741.6 |
| gtp cyclohydrolase i fole | DWX04_11390 | Not Available | Negative | 2660452 - 2661045 | 22693.7 |
| spor domain-containing protein | DWX04_11395 | Not Available | Negative | 2661050 - 2661508 | 17067.7 |
| duf1599 domain-containing protein | DWX04_11405 | Not Available | Negative | 2663691 - 2664233 | 20764.0 |
| lysm peptidoglycan-binding domain-containing protein | DWX04_11410 | Not Available | Negative | 2664347 - 2665237 | 33332.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

