Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2442 domain-containing protein | DWX04_11135 | Not Available | Negative | 2609472 - 2609888 | 16026.2 |
| duf3791 domain-containing protein | DWX04_11140 | Not Available | Positive | 2610199 - 2610627 | 15954.4 |
| duf3990 domain-containing protein | DWX04_11145 | Not Available | Positive | 2610624 - 2611097 | 18396.9 |
| hypothetical protein | DWX04_11150 | Not Available | Positive | 2611094 - 2611321 | 8602.18 |
| glutathione peroxidase | DWX04_11155 | Not Available | Negative | 2611352 - 2611891 | 20074.2 |
| sigma-54-dependent fis family transcriptional regulator | DWX04_11160 | Not Available | Positive | 2612009 - 2613349 | 50094.7 |
| atp-binding protein | DWX04_11165 | Not Available | Positive | 2613465 - 2614766 | 49030.9 |
| atp-dependent helicase | DWX04_11170 | Not Available | Positive | 2614847 - 2618023 | 122690.0 |
| pd-(d/e)xk nuclease family protein | DWX04_11175 | Not Available | Positive | 2618023 - 2620902 | 110959.0 |
| 4-diphosphocytidyl-2c-methyl-d-erythritol kinase | DWX04_11180 | Not Available | Negative | 2620977 - 2621804 | 30681.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

