Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna mismatch endonuclease vsr | DWX04_10765 | Not Available | Negative | 2533188 - 2533685 | 19790.9 |
| hnh endonuclease | DWX04_10770 | Not Available | Negative | 2533692 - 2534516 | 32152.8 |
| atp-binding protein | DWX04_10775 | Not Available | Negative | 2534518 - 2536131 | 60887.9 |
| atp-dependent helicase | DWX04_10780 | Not Available | Negative | 2536144 - 2538042 | 71886.6 |
| hypothetical protein | DWX04_10785 | Not Available | Negative | 2538045 - 2538881 | 32279.4 |
| dna (cytosine-5-)-methyltransferase | DWX04_10790 | Not Available | Negative | 2538886 - 2540010 | 42590.6 |
| dna-binding protein | DWX04_10800 | Not Available | Positive | 2540524 - 2541465 | 36380.1 |
| site-specific integrase | DWX04_10805 | Not Available | Positive | 2541599 - 2542717 | 43560.9 |
| transposase | DWX04_10810 | Not Available | Positive | 2542976 - 2543797 | 32466.9 |
| helix-turn-helix domain-containing protein | DWX04_10815 | Not Available | Positive | 2543995 - 2544369 | 14153.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

