Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWX04_10715 | Not Available | Negative | 2524951 - 2525592 | 24886.2 |
| duf4099 domain-containing protein | DWX04_10720 | Not Available | Positive | 2525676 - 2526461 | 30103.5 |
| dna mismatch repair protein muts | DWX04_10725 | Not Available | Positive | 2526473 - 2527792 | 49849.1 |
| hypothetical protein | DWX04_10730 | Not Available | Positive | 2527822 - 2528052 | 8972.19 |
| duf1738 domain-containing protein | DWX04_10735 | Not Available | Positive | 2528036 - 2529361 | 49886.7 |
| duf3991 domain-containing protein | DWX04_10740 | Not Available | Positive | 2529392 - 2530579 | 44465.1 |
| hypothetical protein | DWX04_10745 | Not Available | Positive | 2530585 - 2531325 | 26983.4 |
| type ia dna topoisomerase | DWX04_10750 | Not Available | Positive | 2531352 - 2531897 | 20187.2 |
| hypothetical protein | DWX04_10755 | Not Available | Positive | 2531894 - 2532439 | 20140.6 |
| hypothetical protein | DWX04_10760 | Not Available | Positive | 2532436 - 2533110 | 25076.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

