Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix dna-binding domain-containing protein | DWX04_10610 | Not Available | Negative | 2503412 - 2504464 | 40495.8 |
| cytidine deaminase | DWX04_10615 | Not Available | Negative | 2504461 - 2504940 | 17760.2 |
| hypothetical protein | DWX04_10620 | Not Available | Positive | 2505160 - 2505483 | 11453.6 |
| duf4476 domain-containing protein | DWX04_10625 | Not Available | Negative | 2505553 - 2506164 | 22886.6 |
| duf4476 domain-containing protein | DWX04_10630 | Not Available | Negative | 2506198 - 2506869 | 25461.8 |
| rna polymerase sigma factor | DWX04_10635 | Not Available | Positive | 2507178 - 2507714 | 21672.0 |
| hypothetical protein | DWX04_10640 | Not Available | Positive | 2507722 - 2508084 | 13745.5 |
| hypothetical protein | DWX04_10645 | Not Available | Positive | 2508106 - 2508654 | 21468.4 |
| hypothetical protein | DWX04_10650 | Not Available | Positive | 2508810 - 2509451 | 24575.2 |
| lysm peptidoglycan-binding domain-containing protein | DWX04_10655 | Not Available | Positive | 2509557 - 2510453 | 35105.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

