Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yccf domain-containing protein | DWX04_10405 | Not Available | Positive | 2453761 - 2454129 | 13206.2 |
| 50s ribosomal protein l11 methyltransferase | DWX04_10410 | Not Available | Negative | 2454351 - 2455196 | 31686.8 |
| thioredoxin | DWX04_10415 | Not Available | Negative | 2455207 - 2455467 | 10400.5 |
| helicase | DWX04_10420 | Not Available | Negative | 2455698 - 2457788 | 81417.1 |
| dna-binding protein | DWX04_10430 | Not Available | Positive | 2458193 - 2458816 | 23853.8 |
| restriction endonuclease subunit r | DWX04_10435 | Not Available | Negative | 2458972 - 2462070 | 117770.0 |
| duf1016 family protein | DWX04_10440 | Not Available | Negative | 2462074 - 2463237 | 44750.5 |
| site-specific dna-methyltransferase | DWX04_10445 | Not Available | Negative | 2463249 - 2465141 | 71771.3 |
| duf4391 family protein | DWX04_10450 | Not Available | Negative | 2465170 - 2465826 | 25549.0 |
| atp-dependent helicase | DWX04_10455 | Not Available | Negative | 2465836 - 2469099 | 125364.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

