Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | DWX04_09950 | Not Available | Positive | 2348424 - 2348801 | 13256.1 |
| hypothetical protein | DWX04_09955 | Not Available | Positive | 2348964 - 2350154 | 45174.1 |
| mbl fold metallo-hydrolase | DWX04_09960 | Not Available | Positive | 2350164 - 2350955 | 30418.8 |
| lactoylglutathione lyase | DWX04_09965 | Not Available | Positive | 2350973 - 2351350 | 14724.3 |
| duf3805 domain-containing protein | DWX04_09970 | Not Available | Positive | 2351393 - 2352226 | 31633.2 |
| abc transporter atp-binding protein | DWX04_09975 | Not Available | Positive | 2352234 - 2354099 | 72108.0 |
| site-specific integrase | DWX04_09980 | Not Available | Positive | 2354183 - 2355385 | 46751.8 |
| transcriptional regulator | DWX04_09985 | Not Available | Positive | 2355865 - 2356698 | 32245.6 |
| flippase | DWX04_09990 | Not Available | Positive | 2356787 - 2358232 | 53987.2 |
| pyruvate formate lyase | DWX04_09995 | Not Available | Positive | 2358229 - 2360277 | 76778.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

