Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_09895 | Not Available | Positive | 2329828 - 2332986 | 116426.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_09900 | Not Available | Positive | 2333010 - 2334785 | 67580.9 |
| histidine-type phosphatase | DWX04_09905 | Not Available | Positive | 2334800 - 2336080 | 48948.6 |
| methylcobamide--com methyltransferase | DWX04_09910 | Not Available | Positive | 2336231 - 2337241 | 36530.3 |
| methionine synthase | DWX04_09915 | Not Available | Positive | 2337234 - 2337920 | 25300.2 |
| na+/glucose cotransporter | DWX04_09925 | Not Available | Negative | 2338212 - 2339783 | 57724.5 |
| cobalamin-binding protein | DWX04_09930 | Not Available | Negative | 2339817 - 2341619 | 66662.9 |
| alpha-xylosidase | DWX04_09935 | Not Available | Negative | 2341625 - 2343871 | 86401.4 |
| right-handed parallel beta-helix repeat-containing protein | DWX04_09940 | Not Available | Negative | 2343882 - 2345873 | 74788.6 |
| transcription termination factor rho | DWX04_09945 | Not Available | Negative | 2345987 - 2347996 | 74254.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

