Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWX04_09845 | Not Available | Positive | 2313250 - 2315529 | 86306.1 |
| polysaccharide lyase | DWX04_09850 | Not Available | Positive | 2315852 - 2317588 | 64258.5 |
| duf3826 domain-containing protein | DWX04_09855 | Not Available | Positive | 2317650 - 2318282 | 23865.6 |
| polysaccharide lyase | DWX04_09860 | Not Available | Positive | 2318482 - 2320164 | 61355.8 |
| pectate lyase | DWX04_09865 | Not Available | Positive | 2320166 - 2323252 | 115925.0 |
| sigma-70 family rna polymerase sigma factor | DWX04_09870 | Not Available | Positive | 2323439 - 2323993 | 21477.1 |
| hypothetical protein | DWX04_09875 | Not Available | Positive | 2324042 - 2324326 | 11191.4 |
| tonb-dependent receptor | DWX04_09880 | Not Available | Positive | 2324361 - 2327462 | 113980.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_09885 | Not Available | Positive | 2327486 - 2329282 | 68220.1 |
| hypothetical protein | DWX04_09890 | Not Available | Positive | 2329551 - 2329709 | 5985.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

