Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate/2-methylcitrate synthase | DWX04_00610 | Not Available | Negative | 128565 - 129908 | 51062.6 |
| nadp-dependent isocitrate dehydrogenase | DWX04_00615 | Not Available | Negative | 129921 - 131066 | 41495.8 |
| aconitate hydratase | DWX04_00620 | Not Available | Negative | 131070 - 133313 | 81089.6 |
| helicase | DWX04_00625 | Not Available | Positive | 133485 - 135377 | 72803.6 |
| dihydrolipoamide acyltransferase | DWX04_00630 | Not Available | Negative | 135561 - 135935 | 13047.7 |
| hypothetical protein | DWX04_00635 | Not Available | Negative | 136168 - 137034 | 33238.6 |
| dna topoisomerase iii | DWX04_00640 | Not Available | Positive | 137308 - 139449 | 79846.9 |
| rrna cytosine-c5-methyltransferase | DWX04_00645 | Not Available | Negative | 139586 - 141013 | 53413.1 |
| hypothetical protein | DWX04_00650 | Not Available | Positive | 141145 - 141852 | 25992.5 |
| sigma-70 family rna polymerase sigma factor | DWX04_00655 | Not Available | Positive | 141855 - 142403 | 21091.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

