Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWX04_09315 | Not Available | Positive | 2201875 - 2203005 | 41358.6 |
| multidrug efflux rnd transporter permease subunit | DWX04_09320 | Not Available | Positive | 2203010 - 2206126 | 112560.0 |
| mechanosensitive ion channel family protein | DWX04_09325 | Not Available | Positive | 2206244 - 2207437 | 45202.9 |
| sensor histidine kinase | DWX04_09330 | Not Available | Negative | 2207556 - 2209052 | 56829.7 |
| tonb-dependent receptor | DWX04_09335 | Not Available | Positive | 2209208 - 2211532 | 88519.1 |
| duf1232 domain-containing protein | DWX04_09340 | Not Available | Positive | 2211677 - 2212039 | 13950.1 |
| tonb-dependent receptor | DWX04_09345 | Not Available | Positive | 2212479 - 2215724 | 119608.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_09350 | Not Available | Positive | 2215738 - 2217228 | 55870.6 |
| hypothetical protein | DWX04_09355 | Not Available | Negative | 2217511 - 2217933 | 15834.3 |
| hypothetical protein | DWX04_09360 | Not Available | Negative | 2217930 - 2218757 | 32037.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

