Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug dmt transporter permease | DWX04_09060 | Not Available | Positive | 2151212 - 2152228 | 35979.8 |
| sugar abc transporter substrate-binding protein | DWX04_09065 | Not Available | Positive | 2152236 - 2153084 | 31260.1 |
| histidine--trna ligase | DWX04_09070 | Not Available | Positive | 2153243 - 2154607 | 50269.7 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DWX04_09075 | Not Available | Negative | 2155186 - 2156376 | 43909.7 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DWX04_09080 | Not Available | Negative | 2156440 - 2157858 | 53348.0 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DWX04_09085 | Not Available | Negative | 2157871 - 2158905 | 38858.7 |
| 4fe-4s dicluster domain-containing protein | DWX04_09090 | Not Available | Negative | 2158914 - 2160380 | 54239.4 |
| co-chaperone groes | DWX04_09095 | Not Available | Positive | 2160761 - 2161033 | 9740.92 |
| molecular chaperone groel | DWX04_09100 | Not Available | Positive | 2161075 - 2162712 | 58147.1 |
| Trna-thr | Not Available | Not Available | Positive | 2162960 - 2163033 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

