Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna pseudouridine synthase | DWX04_08955 | Not Available | Positive | 2118745 - 2119416 | 25519.9 |
| hypothetical protein | DWX04_08960 | Not Available | Negative | 2119481 - 2119786 | 10798.8 |
| sigma-54-dependent fis family transcriptional regulator | DWX04_08965 | Not Available | Negative | 2120071 - 2121453 | 51219.5 |
| hybrid sensor histidine kinase/response regulator | DWX04_08970 | Not Available | Negative | 2121555 - 2124122 | 96928.3 |
| mate family efflux transporter | DWX04_08975 | Not Available | Negative | 2124136 - 2125446 | 48593.3 |
| insulinase family protein | DWX04_08980 | Not Available | Negative | 2125540 - 2126784 | 47349.5 |
| peptidylprolyl isomerase | DWX04_08985 | Not Available | Negative | 2126797 - 2127642 | 31477.6 |
| hypothetical protein | DWX04_08995 | Not Available | Positive | 2128347 - 2132996 | 171825.0 |
| hypothetical protein | DWX04_09000 | Not Available | Positive | 2132993 - 2135350 | 89050.7 |
| nucleotidyltransferase | DWX04_09005 | Not Available | Positive | 2135485 - 2136396 | 33769.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

