Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DWX04_08905 | Not Available | Negative | 2102732 - 2105410 | 101266.0 |
| glycoside hydrolase | DWX04_08910 | Not Available | Negative | 2105473 - 2107554 | 80487.8 |
| duf4982 domain-containing protein | DWX04_08915 | Not Available | Negative | 2107551 - 2109998 | 92701.3 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_08920 | Not Available | Negative | 2110097 - 2111638 | 59338.3 |
| susc/raga family tonb-linked outer membrane protein | DWX04_08925 | Not Available | Negative | 2111652 - 2115005 | 124312.0 |
| fecr family protein | DWX04_08930 | Not Available | Negative | 2115158 - 2116093 | 36546.9 |
| rna polymerase sigma-70 factor | DWX04_08935 | Not Available | Negative | 2116148 - 2116738 | 23832.7 |
| Trna-met | Not Available | Not Available | Positive | 2117059 - 2117134 | Not Available |
| tetr/acrr family transcriptional regulator | DWX04_08945 | Not Available | Positive | 2117366 - 2117965 | 22662.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DWX04_08950 | Not Available | Positive | 2117997 - 2118743 | 25980.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

