Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase rpb6 | DWX04_08495 | Not Available | Negative | 2019128 - 2019463 | 12965.3 |
| outer membrane protein assembly factor bamd | DWX04_08500 | Not Available | Negative | 2019480 - 2020316 | 32450.3 |
| excinuclease abc subunit uvrb | DWX04_08505 | Not Available | Positive | 2020482 - 2022515 | 77700.6 |
| porin | DWX04_08510 | Not Available | Negative | 2022682 - 2023695 | 38665.0 |
| yigz family protein | DWX04_08515 | Not Available | Negative | 2023886 - 2024488 | 22823.7 |
| exonuclease | DWX04_08520 | Not Available | Negative | 2024522 - 2025010 | 18589.9 |
| patatin | DWX04_08525 | Not Available | Positive | 2025218 - 2027428 | 81953.5 |
| mannonate dehydratase | DWX04_08530 | Not Available | Negative | 2027411 - 2028589 | 44766.0 |
| type i pullulanase | DWX04_08535 | Not Available | Negative | 2028647 - 2030641 | 74625.4 |
| crossover junction endodeoxyribonuclease ruvc | DWX04_08540 | Not Available | Negative | 2030646 - 2031215 | 21117.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

