Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na+/h+ antiporter nhac family protein | DWX04_08445 | Not Available | Positive | 2006704 - 2008008 | 46607.5 |
| duf4373 domain-containing protein | DWX04_08450 | Not Available | Negative | 2008186 - 2009022 | 31998.1 |
| duf340 domain-containing protein | DWX04_08455 | Not Available | Positive | 2009641 - 2009919 | 10143.0 |
| lysine exporter lyso family protein | DWX04_08460 | Not Available | Positive | 2009916 - 2010536 | 22344.3 |
| mfs transporter | DWX04_08465 | Not Available | Negative | 2010600 - 2012261 | 59809.1 |
| cys-trna(pro) deacylase | DWX04_08470 | Not Available | Negative | 2012368 - 2012853 | 17802.8 |
| excinuclease abc subunit uvra | DWX04_08475 | Not Available | Negative | 2012868 - 2015696 | 105951.0 |
| lysm peptidoglycan-binding domain-containing protein | DWX04_08480 | Not Available | Positive | 2015851 - 2017659 | 68558.0 |
| port family protein | DWX04_08485 | Not Available | Positive | 2017659 - 2018342 | 25699.9 |
| duf4293 family protein | DWX04_08490 | Not Available | Negative | 2018426 - 2018878 | 16883.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

