Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DWX04_00495 | Not Available | Positive | 104266 - 105930 | 61567.8 |
| sigma-70 family rna polymerase sigma factor | DWX04_00500 | Not Available | Positive | 106031 - 106615 | 23161.5 |
| duf4974 domain-containing protein | DWX04_00505 | Not Available | Positive | 106683 - 107834 | 43733.0 |
| susc/raga family tonb-linked outer membrane protein | DWX04_00510 | Not Available | Positive | 107887 - 111204 | 122723.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_00515 | Not Available | Positive | 111225 - 112715 | 55759.7 |
| duf255 domain-containing protein | DWX04_00520 | Not Available | Positive | 112734 - 113900 | 44550.2 |
| tlpa family protein disulfide reductase | DWX04_00525 | Not Available | Positive | 113902 - 115251 | 50438.2 |
| sodium ion-translocating decarboxylase subunit beta | DWX04_00530 | Not Available | Negative | 115447 - 116682 | 44261.9 |
| oxaloacetate decarboxylase | DWX04_00535 | Not Available | Negative | 116682 - 118544 | 68971.7 |
| oxaloacetate decarboxylase | DWX04_00540 | Not Available | Negative | 118575 - 118826 | 8725.21 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

