Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ribazole phosphatase | DWX04_08115 | Not Available | Positive | 1928811 - 1929341 | 20094.8 |
| duf1622 domain-containing protein | DWX04_08120 | Not Available | Positive | 1929393 - 1929734 | 12539.8 |
| hypothetical protein | DWX04_08125 | Not Available | Negative | 1929859 - 1930101 | 9308.48 |
| hypothetical protein | DWX04_08135 | Not Available | Negative | 1930869 - 1931120 | 9377.15 |
| hypothetical protein | DWX04_08155 | Not Available | Positive | 1935723 - 1936028 | 10751.8 |
| hypothetical protein | DWX04_08160 | Not Available | Positive | 1937018 - 1938271 | 48857.8 |
| Trna-gly | Not Available | Not Available | Positive | 1938889 - 1938964 | Not Available |
| cobalamin biosynthesis protein cobd | DWX04_08170 | Not Available | Negative | 1939000 - 1939932 | 34589.0 |
| pyridoxal phosphate-dependent class ii aminotransferase | DWX04_08175 | Not Available | Negative | 1939914 - 1940924 | 38761.7 |
| cobyric acid synthase | DWX04_08180 | Not Available | Negative | 1940917 - 1942407 | 55436.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

