Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DWX04_07905 | Not Available | Negative | 1882340 - 1882636 | 11416.8 |
| duf2023 family protein | DWX04_07910 | Not Available | Negative | 1882969 - 1883313 | 13416.7 |
| flavodoxin flda | DWX04_07915 | Not Available | Negative | 1883330 - 1883833 | 18032.2 |
| porin family protein | DWX04_07920 | Not Available | Negative | 1884105 - 1884626 | 19772.5 |
| hypothetical protein | DWX04_07925 | Not Available | Negative | 1884648 - 1885169 | 21224.9 |
| port family protein | DWX04_07930 | Not Available | Negative | 1885537 - 1886175 | 22822.1 |
| ion transporter | DWX04_07935 | Not Available | Negative | 1886404 - 1887162 | 28946.1 |
| port family protein | DWX04_07940 | Not Available | Negative | 1887329 - 1888006 | 25168.3 |
| mechanosensitive ion channel family protein | DWX04_07945 | Not Available | Negative | 1888040 - 1888885 | 30929.2 |
| alpha-1,2-fucosyltransferase | DWX04_07955 | Not Available | Positive | 1889795 - 1890640 | 33717.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

