Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DWX04_07500 | Not Available | Positive | 1818558 - 1819943 | 53382.8 |
| dna-binding response regulator | DWX04_07505 | Not Available | Positive | 1819968 - 1820669 | 26556.5 |
| gnat family n-acetyltransferase | DWX04_07510 | Not Available | Negative | 1820720 - 1821676 | 36768.9 |
| porin family protein | DWX04_07515 | Not Available | Negative | 1821790 - 1822281 | 17975.4 |
| gamma carbonic anhydrase family protein | DWX04_07520 | Not Available | Negative | 1822327 - 1822851 | 18532.5 |
| aminopeptidase p family protein | DWX04_07525 | Not Available | Negative | 1822861 - 1824642 | 66913.2 |
| 30s ribosomal protein s21 | DWX04_07530 | Not Available | Positive | 1824811 - 1825002 | 7526.36 |
| recombinase | DWX04_07535 | Not Available | Positive | 1825080 - 1825961 | 34002.6 |
| ribosome-associated translation inhibitor raia | DWX04_07540 | Not Available | Positive | 1825977 - 1826276 | 11325.7 |
| Trna-thr | Not Available | Not Available | Positive | 1826375 - 1826451 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

